Index

A

acquisition_func (calisim.optimisation.implementation.OptimisationMethodModel attribute) ActiveLearningMethod (class in calisim.active_learning.implementation) add_parameter_estimate() (calisim.base.calibration_base.CalibrationWorkflowBase method) algorithm (calisim.uncertainty.implementation.UncertaintyAnalysisMethodModel attribute) analyze() (calisim.abc.pyabc_wrapper.PyABCApproximateBayesianComputation method) (calisim.abc.pymc_wrapper.PyMCApproximateBayesianComputation method) (calisim.active_learning.skactiveml_wrapper.SkActiveMLActiveLearning method) (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) (calisim.bayesian.emcee_wrapper.EmceeBayesianCalibration method) (calisim.bayesian.openturns_wrapper.OpenTurnsBayesianCalibration method) (calisim.evolutionary.evotorch_wrapper.EvoTorchEvolutionary method) (calisim.evolutionary.spotpy_wrapper.SPOTPYEvolutionary method) (calisim.experimental_design.emukit_wrapper.EmukitExperimentalDesign method) (calisim.history_matching.ies_wrapper.IESHistoryMatching method) (calisim.history_matching.pyesmda_wrapper.PyESMDAHistoryMatching method) (calisim.optimisation.botorch_wrapper.BoTorchOptimisation method) (calisim.optimisation.emukit_wrapper.EmukitOptimisation method) (calisim.optimisation.openturns_wrapper.OpenTurnsOptimisation method) (calisim.optimisation.optuna_wrapper.OptunaOptimisation method) (calisim.quadrature.emukit_wrapper.EmukitQuadrature method) (calisim.reliability.openturns_wrapper.OpenTurnsReliabilityAnalysis method) (calisim.sbi.lampe_wrapper.LAMPESimulationBasedInference method) (calisim.sbi.sbi_wrapper.SBISimulationBasedInference method) (calisim.sensitivity.openturns_wrapper.OpenTurnsSensitivityAnalysis method) (calisim.sensitivity.salib_wrapper.SALibSensitivityAnalysis method) (calisim.surrogate.gpytorch_wrapper.GPyTorchSurrogateModel method) (calisim.surrogate.sklearn_wrapper.SklearnSurrogateModel method) (calisim.uncertainty.chaospy_wrapper.ChaospyUncertaintyAnalysis method) (calisim.uncertainty.openturns_wrapper.OpenTurnsUncertaintyAnalysis method) (calisim.uncertainty.pygpc_wrapper.PygpcUncertaintyAnalysis method)

analyze_kwargs (calisim.data_model.simulation_data_models.CalibrationModel attribute) AnharmonicOscillator (class in calisim.example_models.anharmonic_oscillator) append_artifact() (calisim.base.calibration_base.CalibrationWorkflowBase method) apply_overrides() (calisim.config.hydra_bridge.HydraConfiguration method) ApproximateBayesianComputationMethod (class in calisim.abc.implementation) assign_categorical_parameter_values() (calisim.base.calibration_base.CalibrationWorkflowBase method) auto_set_cuda_visible_devices (calisim.data_model.simulation_data_models.OrchestrationModel attribute) available (calisim.config.hydra_bridge.HydraConfiguration property)

B

BaseModel.Config (class in calisim.data_model.simulation_data_models) batch_size (calisim.surrogate.implementation.SurrogateModelMethodModel attribute) batched (calisim.data_model.simulation_data_models.CalibrationModel attribute)

BayesianCalibrationMethod (class in calisim.bayesian.implementation) BoTorchOptimisation (class in calisim.optimisation.botorch_wrapper) BrayCurtisDistance (class in calisim.statistics.discrepancy)

C

calc_uncertainty_calibration_metric() (calisim.base.calibration_base.CalibrationWorkflowBase method) calculate() (calisim.statistics.discrepancy.BrayCurtisDistance method) (calisim.statistics.discrepancy.CanberraDistance method) (calisim.statistics.discrepancy.ChebyshevDistance method) (calisim.statistics.discrepancy.CorrelationDistance method) (calisim.statistics.discrepancy.CosineDistance method) (calisim.statistics.discrepancy.DistanceMetricBase method) (calisim.statistics.discrepancy.EnergyDistance method) (calisim.statistics.discrepancy.GaussianLogLikelihood method) (calisim.statistics.discrepancy.JensenShannonDistance method) (calisim.statistics.discrepancy.KlDivergence method) (calisim.statistics.discrepancy.L1Norm method) (calisim.statistics.discrepancy.L2Norm method) (calisim.statistics.discrepancy.MeanAbsoluteError method) (calisim.statistics.discrepancy.MeanAbsolutePercentageError method) (calisim.statistics.discrepancy.MeanPinballLoss method) (calisim.statistics.discrepancy.MeanSquaredError method) (calisim.statistics.discrepancy.MedianAbsoluteError method) (calisim.statistics.discrepancy.MinkowskiDistance method) (calisim.statistics.discrepancy.MultivariateNormalLogLikelihood method) (calisim.statistics.discrepancy.PoissonLogLikelihood method) (calisim.statistics.discrepancy.RootMeanSquaredError method) (calisim.statistics.discrepancy.StudentsTLogLikelihood method) (calisim.statistics.discrepancy.WassersteinDistance method) calculate_shap_importances() (calisim.base.calibration_base.CalibrationWorkflowBase method) calibration_func_kwargs (calisim.data_model.simulation_data_models.CalibrationModel attribute) calibration_func_wrapper() (calisim.base.calibration_base.CalibrationWorkflowBase method) (in module calisim.utils.utilities) CalibrationMethodBase (class in calisim.base.calibration_base) CalibrationWorkflowBase (class in calisim.base.calibration_base) calisim.abc.implementation module calisim.abc.pyabc_wrapper module calisim.abc.pymc_wrapper module calisim.active_learning.implementation module calisim.active_learning.skactiveml_wrapper module calisim.base.calibration_base module calisim.base.emukit_base module calisim.base.example_model_base module calisim.base.history_matching_base module calisim.base.openturns_base module calisim.base.sbi_base module calisim.base.surrogate_base module calisim.bayesian.emcee_wrapper module calisim.bayesian.implementation module calisim.bayesian.openturns_wrapper module calisim.config.hydra_bridge module calisim.data_model.simulation_data_models module calisim.estimators.emukit_estimator module calisim.estimators.gpytorch_estimator module calisim.estimators.openturns_estimator module calisim.evolutionary.evotorch_wrapper module calisim.evolutionary.implementation module calisim.evolutionary.spotpy_wrapper module calisim.example_models.anharmonic_oscillator module calisim.example_models.lorenz_95 module

calisim.example_models.lotka_volterra module calisim.example_models.sir_ode module calisim.experimental_design.emukit_wrapper module calisim.experimental_design.implementation module calisim.history_matching.ies_wrapper module calisim.history_matching.implementation module calisim.history_matching.pyesmda_wrapper module calisim.optimisation.botorch_wrapper module calisim.optimisation.emukit_wrapper module calisim.optimisation.implementation module calisim.optimisation.openturns_wrapper module calisim.optimisation.optuna_wrapper module calisim.orchestration.torchx_bridge module calisim.quadrature.emukit_wrapper module calisim.quadrature.implementation module calisim.reliability.implementation module calisim.reliability.openturns_wrapper module calisim.sbi.implementation module calisim.sbi.lampe_wrapper module calisim.sbi.sbi_wrapper module calisim.sensitivity.implementation module calisim.sensitivity.openturns_wrapper module calisim.sensitivity.salib_wrapper module calisim.statistics.design module calisim.statistics.discrepancy module calisim.surrogate.gpytorch_wrapper module calisim.surrogate.implementation module calisim.surrogate.sklearn_wrapper module calisim.uncertainty.chaospy_wrapper module calisim.uncertainty.implementation module calisim.uncertainty.openturns_wrapper module calisim.uncertainty.pygpc_wrapper module calisim.utils.utilities module call_calibration_func() (calisim.base.calibration_base.CalibrationWorkflowBase method) CanberraDistance (class in calisim.statistics.discrepancy) ChaospyUncertaintyAnalysis (class in calisim.uncertainty.chaospy_wrapper) ChebyshevDistance (class in calisim.statistics.discrepancy) comparison (calisim.reliability.implementation.ReliabilityAnalysisMethodModel attribute) convert_parameters() (calisim.history_matching.ies_wrapper.IESHistoryMatching method) CorrelationDistance (class in calisim.statistics.discrepancy) CosineDistance (class in calisim.statistics.discrepancy) covariance (calisim.history_matching.implementation.HistoryMatchingMethodModel attribute) cpu (calisim.data_model.simulation_data_models.OrchestrationModel attribute) create_file_path() (calisim.base.calibration_base.CalibrationWorkflowBase method) (in module calisim.utils.utilities)

D

data_type (calisim.data_model.simulation_data_models.ParameterModel attribute) directions (calisim.evolutionary.implementation.EvolutionaryMethodModel attribute) (calisim.optimisation.implementation.OptimisationMethodModel attribute) dist_name_processing() (calisim.abc.pyabc_wrapper.PyABCApproximateBayesianComputation method) (calisim.uncertainty.pygpc_wrapper.PygpcUncertaintyAnalysis method)

distance (calisim.abc.implementation.ApproximateBayesianComputationMethodModel attribute) DistanceMetricBase (class in calisim.statistics.discrepancy) distribution_args (calisim.data_model.simulation_data_models.DistributionModel attribute) distribution_bounds (calisim.data_model.simulation_data_models.DistributionModel attribute) distribution_kwargs (calisim.data_model.simulation_data_models.DistributionModel attribute) distribution_name (calisim.data_model.simulation_data_models.DistributionModel attribute)

E

early_stop() (calisim.utils.utilities.EarlyStopper method) EarlyStopper (class in calisim.utils.utilities) EmceeBayesianCalibration (class in calisim.bayesian.emcee_wrapper) EmukitBase (class in calisim.base.emukit_base) EmukitEstimator (class in calisim.estimators.emukit_estimator) EmukitExperimentalDesign (class in calisim.experimental_design.emukit_wrapper) EmukitOptimisation (class in calisim.optimisation.emukit_wrapper) EmukitQuadrature (class in calisim.quadrature.emukit_wrapper) EnergyDistance (class in calisim.statistics.discrepancy) entrypoint (calisim.data_model.simulation_data_models.OrchestrationModel attribute) epsilon (calisim.abc.implementation.ApproximateBayesianComputationMethodModel attribute) estimate (calisim.data_model.simulation_data_models.ParameterEstimateModel attribute) estimates (calisim.data_model.simulation_data_models.ParameterEstimatesModel attribute) evaluation() (calisim.evolutionary.spotpy_wrapper.SPOTSetup method) EvolutionaryMethod (class in calisim.evolutionary.implementation) EvoTorchEvolutionary (class in calisim.evolutionary.evotorch_wrapper) ExampleModelBase (class in calisim.base.example_model_base) ExampleModelContainer (class in calisim.base.example_model_base) execute() (calisim.abc.pyabc_wrapper.PyABCApproximateBayesianComputation method) (calisim.abc.pymc_wrapper.PyMCApproximateBayesianComputation method) (calisim.active_learning.skactiveml_wrapper.SkActiveMLActiveLearning method) (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) (calisim.bayesian.emcee_wrapper.EmceeBayesianCalibration method) (calisim.bayesian.openturns_wrapper.OpenTurnsBayesianCalibration method) (calisim.evolutionary.evotorch_wrapper.EvoTorchEvolutionary method) (calisim.evolutionary.spotpy_wrapper.SPOTPYEvolutionary method) (calisim.experimental_design.emukit_wrapper.EmukitExperimentalDesign method) (calisim.history_matching.ies_wrapper.IESHistoryMatching method) (calisim.history_matching.pyesmda_wrapper.PyESMDAHistoryMatching method) (calisim.optimisation.botorch_wrapper.BoTorchOptimisation method) (calisim.optimisation.emukit_wrapper.EmukitOptimisation method) (calisim.optimisation.openturns_wrapper.OpenTurnsOptimisation method) (calisim.optimisation.optuna_wrapper.OptunaOptimisation method) (calisim.quadrature.emukit_wrapper.EmukitQuadrature method) (calisim.reliability.openturns_wrapper.OpenTurnsReliabilityAnalysis method) (calisim.sbi.lampe_wrapper.LAMPESimulationBasedInference method) (calisim.sbi.sbi_wrapper.SBISimulationBasedInference method) (calisim.sensitivity.openturns_wrapper.OpenTurnsSensitivityAnalysis method) (calisim.sensitivity.salib_wrapper.SALibSensitivityAnalysis method) (calisim.surrogate.gpytorch_wrapper.GPyTorchSurrogateModel method) (calisim.surrogate.sklearn_wrapper.SklearnSurrogateModel method) (calisim.uncertainty.chaospy_wrapper.ChaospyUncertaintyAnalysis method) (calisim.uncertainty.openturns_wrapper.OpenTurnsUncertaintyAnalysis method) (calisim.uncertainty.pygpc_wrapper.PygpcUncertaintyAnalysis method)

experiment_name (calisim.data_model.simulation_data_models.CalibrationModel attribute) ExperimentalDesignMethod (class in calisim.experimental_design.implementation) extend_X() (calisim.base.calibration_base.CalibrationWorkflowBase method) (in module calisim.utils.utilities)

F

figsize (calisim.data_model.simulation_data_models.CalibrationModel attribute) fit() (calisim.estimators.emukit_estimator.EmukitEstimator method) (calisim.estimators.openturns_estimator.FunctionalChaosEstimator method) (calisim.estimators.openturns_estimator.KrigingEstimator method) fit_recalibrator() (calisim.base.calibration_base.CalibrationWorkflowBase method)

flatten_Y (calisim.surrogate.implementation.SurrogateModelMethodModel attribute) (calisim.uncertainty.implementation.UncertaintyAnalysisMethodModel attribute) forward() (calisim.estimators.gpytorch_estimator.SingleTaskGPRegressionModel method) forward_model() (in module calisim.history_matching.pyesmda_wrapper) FunctionalChaosEstimator (class in calisim.estimators.openturns_estimator)

G

GaussianLogLikelihood (class in calisim.statistics.discrepancy) get_artifacts() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_calibration_func_kwargs() (calisim.base.calibration_base.CalibrationWorkflowBase method) get_categorical_parameter() (calisim.base.calibration_base.CalibrationWorkflowBase method) get_configuration() (calisim.config.hydra_bridge.HydraConfiguration method) get_constants() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_datetime_now() (in module calisim.utils.utilities) get_def() (in module calisim.orchestration.torchx_bridge) get_default_rng() (calisim.base.calibration_base.CalibrationWorkflowBase method) get_df() (calisim.example_models.anharmonic_oscillator.AnharmonicOscillator method) get_distance_metric_func() (in module calisim.statistics.discrepancy) get_emulator() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_engines() (calisim.base.calibration_base.CalibrationMethodBase method) get_examples_outdir() (in module calisim.utils.utilities) get_full_factorial_design() (calisim.base.calibration_base.CalibrationWorkflowBase method) (in module calisim.statistics.design) get_implementations() (in module calisim.abc.implementation) (in module calisim.active_learning.implementation) (in module calisim.bayesian.implementation) (in module calisim.evolutionary.implementation) (in module calisim.experimental_design.implementation) (in module calisim.history_matching.implementation) (in module calisim.optimisation.implementation) (in module calisim.quadrature.implementation) (in module calisim.reliability.implementation) (in module calisim.sbi.implementation) (in module calisim.sensitivity.implementation) (in module calisim.surrogate.implementation) (in module calisim.uncertainty.implementation)

get_observed_data() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) (calisim.base.example_model_base.ExampleModelBase method) (calisim.example_models.anharmonic_oscillator.AnharmonicOscillator method) (calisim.example_models.lorenz_95.Lorenz95 method) (calisim.example_models.lotka_volterra.LotkaVolterraModel method) (calisim.example_models.sir_ode.SirOdesModel method) get_ot_func_wrapper() (calisim.base.openturns_base.OpenTurnsBase method) get_parameter_bounds() (calisim.base.calibration_base.CalibrationWorkflowBase method) get_parameter_estimates() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_parameters() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_raw_config() (calisim.config.hydra_bridge.HydraConfiguration method) get_sampler() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_simulation_ids() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_simulation_uuid() (calisim.base.calibration_base.CalibrationWorkflowBase method) (in module calisim.utils.utilities) get_single_task_exact_gp() (in module calisim.estimators.gpytorch_estimator) get_X() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) get_X_Y() (calisim.base.emukit_base.EmukitBase method) (calisim.base.openturns_base.OpenTurnsBase method) get_Y() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) gpu (calisim.data_model.simulation_data_models.OrchestrationModel attribute) GPyTorchSurrogateModel (class in calisim.surrogate.gpytorch_wrapper) groups (calisim.data_model.simulation_data_models.CalibrationModel attribute)

H

HistoryMatchingBase (class in calisim.base.history_matching_base)

HistoryMatchingMethod (class in calisim.history_matching.implementation) HydraConfiguration (class in calisim.config.hydra_bridge)

I

IESHistoryMatching (class in calisim.history_matching.ies_wrapper) image (calisim.data_model.simulation_data_models.OrchestrationModel attribute)

initial_state (calisim.bayesian.implementation.BayesianCalibrationMethodModel attribute) instantiate() (calisim.config.hydra_bridge.HydraConfiguration method)

J

JensenShannonDistance (class in calisim.statistics.discrepancy)

join() (calisim.base.calibration_base.CalibrationWorkflowBase method)

K

kernel (calisim.quadrature.implementation.QuadratureMethodModel attribute)

KlDivergence (class in calisim.statistics.discrepancy) KrigingEstimator (class in calisim.estimators.openturns_estimator)

L

L1Norm (class in calisim.statistics.discrepancy) L2Norm (class in calisim.statistics.discrepancy) LAMPESimulationBasedInference (class in calisim.sbi.lampe_wrapper) launch() (calisim.orchestration.torchx_bridge.TorchXJobLauncher method) (in module calisim.orchestration.torchx_bridge)

log_density (calisim.bayesian.implementation.BayesianCalibrationMethodModel attribute) log_dir (calisim.data_model.simulation_data_models.OrchestrationModel attribute) Lorenz95 (class in calisim.example_models.lorenz_95) lorenz95() (calisim.example_models.lorenz_95.Lorenz95 method) LotkaVolterraModel (class in calisim.example_models.lotka_volterra) lr (calisim.data_model.simulation_data_models.CalibrationModel attribute)

M

MeanAbsoluteError (class in calisim.statistics.discrepancy) MeanAbsolutePercentageError (class in calisim.statistics.discrepancy) MeanPinballLoss (class in calisim.statistics.discrepancy) MeanSquaredError (class in calisim.statistics.discrepancy) measure (calisim.quadrature.implementation.QuadratureMethodModel attribute) MedianAbsoluteError (class in calisim.statistics.discrepancy) memMB (calisim.data_model.simulation_data_models.OrchestrationModel attribute) merge() (calisim.config.hydra_bridge.HydraConfiguration method) method (calisim.data_model.simulation_data_models.CalibrationModel attribute) method_kwargs (calisim.data_model.simulation_data_models.CalibrationModel attribute) min_population_size (calisim.abc.implementation.ApproximateBayesianComputationMethodModel attribute) MinkowskiDistance (class in calisim.statistics.discrepancy) module calisim.abc.implementation calisim.abc.pyabc_wrapper calisim.abc.pymc_wrapper calisim.active_learning.implementation calisim.active_learning.skactiveml_wrapper calisim.base.calibration_base calisim.base.emukit_base calisim.base.example_model_base calisim.base.history_matching_base calisim.base.openturns_base calisim.base.sbi_base calisim.base.surrogate_base calisim.bayesian.emcee_wrapper calisim.bayesian.implementation calisim.bayesian.openturns_wrapper calisim.config.hydra_bridge calisim.data_model.simulation_data_models calisim.estimators.emukit_estimator calisim.estimators.gpytorch_estimator calisim.estimators.openturns_estimator calisim.evolutionary.evotorch_wrapper calisim.evolutionary.implementation calisim.evolutionary.spotpy_wrapper calisim.example_models.anharmonic_oscillator calisim.example_models.lorenz_95 calisim.example_models.lotka_volterra calisim.example_models.sir_ode calisim.experimental_design.emukit_wrapper calisim.experimental_design.implementation calisim.history_matching.ies_wrapper calisim.history_matching.implementation calisim.history_matching.pyesmda_wrapper calisim.optimisation.botorch_wrapper calisim.optimisation.emukit_wrapper calisim.optimisation.implementation calisim.optimisation.openturns_wrapper calisim.optimisation.optuna_wrapper calisim.orchestration.torchx_bridge calisim.quadrature.emukit_wrapper calisim.quadrature.implementation calisim.reliability.implementation calisim.reliability.openturns_wrapper calisim.sbi.implementation calisim.sbi.lampe_wrapper calisim.sbi.sbi_wrapper calisim.sensitivity.implementation calisim.sensitivity.openturns_wrapper calisim.sensitivity.salib_wrapper calisim.statistics.design calisim.statistics.discrepancy calisim.surrogate.gpytorch_wrapper calisim.surrogate.implementation calisim.surrogate.sklearn_wrapper calisim.uncertainty.chaospy_wrapper calisim.uncertainty.implementation calisim.uncertainty.openturns_wrapper calisim.uncertainty.pygpc_wrapper calisim.utils.utilities

moves (calisim.bayesian.implementation.BayesianCalibrationMethodModel attribute) MultivariateNormalLogLikelihood (class in calisim.statistics.discrepancy)

N

n_bootstrap (calisim.abc.implementation.ApproximateBayesianComputationMethodModel attribute) n_chains (calisim.data_model.simulation_data_models.CalibrationModel attribute) n_init (calisim.data_model.simulation_data_models.CalibrationModel attribute) n_iterations (calisim.data_model.simulation_data_models.CalibrationModel attribute) n_jobs (calisim.data_model.simulation_data_models.CalibrationModel attribute) n_out (calisim.data_model.simulation_data_models.CalibrationModel attribute)

n_replicates (calisim.data_model.simulation_data_models.CalibrationModel attribute) n_samples (calisim.data_model.simulation_data_models.CalibrationModel attribute) name (calisim.data_model.simulation_data_models.OrchestrationModel attribute) (calisim.data_model.simulation_data_models.ParameterEstimateModel attribute) (calisim.data_model.simulation_data_models.ParameterModel attribute) num_replicas (calisim.data_model.simulation_data_models.OrchestrationModel attribute) num_simulations (calisim.sbi.implementation.SimulationBasedInferenceMethodModel attribute)

O

objective (calisim.evolutionary.implementation.EvolutionaryMethodModel attribute) objectivefunction() (calisim.evolutionary.spotpy_wrapper.SPOTSetup method) observed_data (calisim.data_model.simulation_data_models.CalibrationModel attribute) OpenTurnsBase (class in calisim.base.openturns_base) OpenTurnsBayesianCalibration (class in calisim.bayesian.openturns_wrapper) OpenTurnsOptimisation (class in calisim.optimisation.openturns_wrapper) OpenTurnsReliabilityAnalysis (class in calisim.reliability.openturns_wrapper) OpenTurnsSensitivityAnalysis (class in calisim.sensitivity.openturns_wrapper)

OpenTurnsUncertaintyAnalysis (class in calisim.uncertainty.openturns_wrapper) operators (calisim.evolutionary.implementation.EvolutionaryMethodModel attribute) OptimisationMethod (class in calisim.optimisation.implementation) OptunaOptimisation (class in calisim.optimisation.optuna_wrapper) order (calisim.sensitivity.implementation.SensitivityAnalysisMethodModel attribute) (calisim.uncertainty.implementation.UncertaintyAnalysisMethodModel attribute) outdir (calisim.data_model.simulation_data_models.CalibrationModel attribute) output_labels (calisim.data_model.simulation_data_models.CalibrationModel attribute)

P

parallel_backend (calisim.data_model.simulation_data_models.CalibrationModel attribute) parameter_spec (calisim.data_model.simulation_data_models.CalibrationModel attribute) parameter_tags (calisim.data_model.simulation_data_models.ParameterModel attribute) parameter_value (calisim.data_model.simulation_data_models.ParameterModel attribute) parameter_values (calisim.data_model.simulation_data_models.ParameterModel attribute) ParameterDataType (class in calisim.data_model.simulation_data_models) parameters (calisim.data_model.simulation_data_models.ParameterSpecification attribute) parameters() (calisim.evolutionary.spotpy_wrapper.SPOTSetup method) partition (calisim.data_model.simulation_data_models.OrchestrationModel attribute) pass_calibration_workflow (calisim.data_model.simulation_data_models.CalibrationModel attribute) plot_simulated_vs_observed() (calisim.base.calibration_base.CalibrationWorkflowBase method) PoissonLogLikelihood (class in calisim.statistics.discrepancy) posthook_analyze() (calisim.base.calibration_base.CalibrationWorkflowBase method) posthook_calibration_func() (calisim.base.calibration_base.CalibrationWorkflowBase method) posthook_execute() (calisim.base.calibration_base.CalibrationWorkflowBase method) posthook_specify() (calisim.base.calibration_base.CalibrationWorkflowBase method) postprocess() (calisim.sbi.lampe_wrapper.LAMPESimulationBasedInference method)

pre_post_hooks() (in module calisim.base.calibration_base) predict() (calisim.estimators.emukit_estimator.EmukitEstimator method) (calisim.estimators.openturns_estimator.FunctionalChaosEstimator method) (calisim.estimators.openturns_estimator.KrigingEstimator method) prehook_analyze() (calisim.base.calibration_base.CalibrationWorkflowBase method) prehook_calibration_func() (calisim.base.calibration_base.CalibrationWorkflowBase method) prehook_execute() (calisim.base.calibration_base.CalibrationWorkflowBase method) prehook_specify() (calisim.base.calibration_base.CalibrationWorkflowBase method) prepare_analyze() (calisim.base.calibration_base.CalibrationWorkflowBase method) preprocess() (calisim.sbi.lampe_wrapper.LAMPESimulationBasedInference method) present_fig() (calisim.base.calibration_base.CalibrationWorkflowBase method) pretty() (calisim.config.hydra_bridge.HydraConfiguration method) PriorCollection (class in calisim.sbi.lampe_wrapper) PyABCApproximateBayesianComputation (class in calisim.abc.pyabc_wrapper) PyESMDAHistoryMatching (class in calisim.history_matching.pyesmda_wrapper) PygpcModel (class in calisim.uncertainty.pygpc_wrapper) PygpcUncertaintyAnalysis (class in calisim.uncertainty.pygpc_wrapper) PyMCApproximateBayesianComputation (class in calisim.abc.pymc_wrapper)

Q

QuadratureMethod (class in calisim.quadrature.implementation)

quantile (calisim.abc.implementation.ApproximateBayesianComputationMethodModel attribute) query_strategy (calisim.active_learning.implementation.ActiveLearningMethodModel attribute)

R

random_seed (calisim.data_model.simulation_data_models.CalibrationModel attribute) ReliabilityAnalysisMethod (class in calisim.reliability.implementation) replicate_samples() (calisim.base.openturns_base.OpenTurnsBase method)

reset_y() (calisim.example_models.anharmonic_oscillator.AnharmonicOscillator method) rk4_step() (calisim.example_models.lorenz_95.Lorenz95 method) RootMeanSquaredError (class in calisim.statistics.discrepancy) run_simulation() (calisim.history_matching.ies_wrapper.IESHistoryMatching method)

S

SALibSensitivityAnalysis (class in calisim.sensitivity.salib_wrapper) sample() (calisim.sbi.lampe_wrapper.PriorCollection method) sample_parameters() (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) (calisim.base.emukit_base.EmukitBase method) (calisim.base.openturns_base.OpenTurnsBase method) (calisim.base.surrogate_base.SurrogateBase method) SBISimulationBasedInference (class in calisim.sbi.sbi_wrapper) scheduler (calisim.data_model.simulation_data_models.OrchestrationModel attribute) score() (calisim.estimators.emukit_estimator.EmukitEstimator method) (calisim.estimators.openturns_estimator.FunctionalChaosEstimator method) (calisim.estimators.openturns_estimator.KrigingEstimator method) SensitivityAnalysisMethod (class in calisim.sensitivity.implementation) set_categorical_parameter() (calisim.base.calibration_base.CalibrationWorkflowBase method) set_output_labels_from_Y() (calisim.base.calibration_base.CalibrationWorkflowBase method) set_predict_request() (calisim.estimators.emukit_estimator.EmukitEstimator method) set_score_request() (calisim.estimators.emukit_estimator.EmukitEstimator method) (calisim.estimators.openturns_estimator.FunctionalChaosEstimator method) (calisim.estimators.openturns_estimator.KrigingEstimator method) setup_from_workflow() (calisim.evolutionary.spotpy_wrapper.SPOTSetup method) simulate() (calisim.base.example_model_base.ExampleModelBase method) (calisim.example_models.anharmonic_oscillator.AnharmonicOscillator method) (calisim.example_models.lorenz_95.Lorenz95 method) (calisim.example_models.lotka_volterra.LotkaVolterraModel method) (calisim.example_models.sir_ode.SirOdesModel method) (calisim.uncertainty.pygpc_wrapper.PygpcModel method) simulation() (calisim.evolutionary.spotpy_wrapper.SPOTSetup method) SimulationBasedInferenceBase (class in calisim.base.sbi_base) SimulationBasedInferenceMethod (class in calisim.sbi.implementation) SingleTaskGPRegressionModel (class in calisim.estimators.gpytorch_estimator)

SirOdesModel (class in calisim.example_models.sir_ode) SkActiveMLActiveLearning (class in calisim.active_learning.skactiveml_wrapper) SklearnSurrogateModel (class in calisim.surrogate.sklearn_wrapper) solver (calisim.uncertainty.implementation.UncertaintyAnalysisMethodModel attribute) specify() (calisim.abc.pyabc_wrapper.PyABCApproximateBayesianComputation method) (calisim.abc.pymc_wrapper.PyMCApproximateBayesianComputation method) (calisim.base.calibration_base.CalibrationMethodBase method) (calisim.base.calibration_base.CalibrationWorkflowBase method) (calisim.base.emukit_base.EmukitBase method) (calisim.base.history_matching_base.HistoryMatchingBase method) (calisim.base.openturns_base.OpenTurnsBase method) (calisim.base.sbi_base.SimulationBasedInferenceBase method) (calisim.base.surrogate_base.SurrogateBase method) (calisim.bayesian.emcee_wrapper.EmceeBayesianCalibration method) (calisim.bayesian.openturns_wrapper.OpenTurnsBayesianCalibration method) (calisim.evolutionary.evotorch_wrapper.EvoTorchEvolutionary method) (calisim.evolutionary.spotpy_wrapper.SPOTPYEvolutionary method) (calisim.optimisation.botorch_wrapper.BoTorchOptimisation method) (calisim.optimisation.optuna_wrapper.OptunaOptimisation method) (calisim.sbi.lampe_wrapper.LAMPESimulationBasedInference method) (calisim.sensitivity.salib_wrapper.SALibSensitivityAnalysis method) (calisim.uncertainty.chaospy_wrapper.ChaospyUncertaintyAnalysis method) (calisim.uncertainty.pygpc_wrapper.PygpcUncertaintyAnalysis method) SPOTPYEvolutionary (class in calisim.evolutionary.spotpy_wrapper) SPOTSetup (class in calisim.evolutionary.spotpy_wrapper) step() (calisim.example_models.anharmonic_oscillator.AnharmonicOscillator method) storage (calisim.data_model.simulation_data_models.CalibrationModel attribute) StudentsTLogLikelihood (class in calisim.statistics.discrepancy) sum_stat (calisim.abc.implementation.ApproximateBayesianComputationMethodModel attribute) SurrogateBase (class in calisim.base.surrogate_base) SurrogateModelMethod (class in calisim.surrogate.implementation)

T

test_size (calisim.data_model.simulation_data_models.CalibrationModel attribute) threshold (calisim.reliability.implementation.ReliabilityAnalysisMethodModel attribute) time (calisim.data_model.simulation_data_models.OrchestrationModel attribute)

to_csv() (calisim.base.calibration_base.CalibrationWorkflowBase method) to_dict() (calisim.config.hydra_bridge.HydraConfiguration method) TorchXJobLauncher (class in calisim.orchestration.torchx_bridge)

U

uncertainty (calisim.data_model.simulation_data_models.ParameterEstimateModel attribute) UncertaintyAnalysisMethod (class in calisim.uncertainty.implementation)

use_saasbo (calisim.optimisation.implementation.OptimisationMethodModel attribute) use_shap (calisim.data_model.simulation_data_models.CalibrationModel attribute)

V

validate() (calisim.config.hydra_bridge.HydraConfiguration method) (calisim.uncertainty.pygpc_wrapper.PygpcModel method)

verbose (calisim.data_model.simulation_data_models.CalibrationModel attribute)

W

wait_interval (calisim.data_model.simulation_data_models.OrchestrationModel attribute)

walltime (calisim.data_model.simulation_data_models.CalibrationModel attribute) WassersteinDistance (class in calisim.statistics.discrepancy)

X

X (calisim.data_model.simulation_data_models.CalibrationModel attribute)

Y

Y (calisim.data_model.simulation_data_models.CalibrationModel attribute)