Source code for calisim.data_model.simulation_data_models

"""Contains Pydantic data models for the simulation

Several Pydantic data models are defined for various
simulation calibration procedures.

"""

from enum import Enum
from typing import Any

import numpy as np
import pandas as pd
from pydantic import BaseModel as PydanticBaseModel
from pydantic import Field


[docs] class BaseModel(PydanticBaseModel): """Base Pydantic data model. Args: PydanticBaseModel (PydanticBaseModel): The Pydantic Base model class. """
[docs] class Config: arbitrary_types_allowed = True protected_namespaces = ()
[docs] class ParameterDataType(Enum): DISCRETE: str = "discrete" CONTINUOUS: str = "continuous" CATEGORICAL: str = "categorical"
[docs] class ParameterModel(BaseModel): """The simulation parameter data model. Args: BaseModel (BaseModel): The Pydantic Base model class. """ name: str = Field(description="The parameter name") parameter_values: list[float] | None = Field( description="The list of parameter values.", default=None ) parameter_tags: dict[str, str] | None = Field( description="A collection of metadata tags.", default=None ) data_type: ParameterDataType = Field( description="The parameter data type", default=ParameterDataType.CONTINUOUS )
[docs] class DistributionModel(ParameterModel): """The probability distribution data model. Args: ParameterModel (ParameterModel): The simulation parameter data model. """ distribution_name: str = Field( description="The distribution name", default="uniform" ) distribution_bounds: list | None = Field( description="The distribution bounds", default=None ) distribution_args: list | None = Field( description="The distribution positional arguments", default=None ) distribution_kwargs: dict[str, Any] | None = Field( description="The distribution named arguments", default=None )
[docs] class ParameterSpecification(BaseModel): """The collection of parameters. Args: BaseModel (BaseModel): The Pydantic Base model class. """ parameters: list[DistributionModel] | None = Field( description="The parameter specification list", default=None )
[docs] class CalibrationModel(BaseModel): """The calibration data model. Args: BaseModel (BaseModel): The Pydantic Base model class. """ parameter_spec: ParameterSpecification | None = Field( description="The parameter specification", default=None ) experiment_name: str | None = Field( description="The modelling experiment name", default="default" ) outdir: str | None = Field( description="The output directory for modelling results", default=None ) method: str = Field(description="The calibration method or algorithm", default="") method_kwargs: dict[str, Any] | None = Field( description="The calibration method named arguments", default=None ) calibration_func_kwargs: dict[str, Any] | None = Field( description="The calibration function named arguments", default=None ) pass_calibration_workflow: bool | str | None = Field( description="Pass the calibration workflow into the calibration function", default=None, ) analyze_kwargs: dict[str, Any] | None = Field( description="The analyze step named arguments", default=None ) X: np.ndarray | pd.DataFrame | list | None = Field( description="The simulation input data", default=None ) Y: np.ndarray | pd.DataFrame | list | None = Field( description="The simulation output data", default=None ) test_size: float | int = Field( description="The size of the testing dataset.", default=0.0 ) n_out: int = Field(description="Number of simulation outputs", default=1) observed_data: np.ndarray | pd.DataFrame | float | None = Field( description="The empirical or observed data", default=None ) n_samples: int = Field(description="The number of samples to take", default=1) n_chains: int = Field(description="The number of Markov chains", default=1) n_init: int = Field(description="The number of initial samples or steps", default=1) n_iterations: int = Field( description="The number of iterations for sequential calibrators", default=1 ) lr: float = Field( description="The learning rate of the model", default=0.01, ) random_seed: int | None = Field( description="The random seed for replicability", default=None ) use_shap: bool = Field( description="Whether to use SHAP for feature explanations", default=False ) n_replicates: int = Field( description="The number of replicate simulations to run", default=1 ) n_jobs: int = Field(description="The number of jobs to run in parallel", default=1) walltime: int = Field(description="The maximum calibration walltime", default=1) output_labels: list[str] | None = Field( description="The list of simulation output names", default=None ) groups: list[str] | None = Field( description="The list of parameter groups", default=None ) parallel_backend: str = Field( description="The backend engine to run parallel jobs", default="" ) batched: bool = Field(description="Whether to batch the simulations", default=False) verbose: bool = Field( description="Whether to print calibration messages", default=False ) figsize: tuple[int, int] = Field( description="The figure size for visualisations", default=(12, 12) )
[docs] class ParameterEstimateModel(BaseModel): """The simulation parameter estimate data model. Args: BaseModel (BaseModel): The Pydantic Base model class. """ name: str = Field(description="The parameter name.") estimate: float = Field( description="The estimated parameter value; a point estimate" ) uncertainty: float | None = Field( description="The uncertainty of the parameter estimate", default=None )
[docs] class ParameterEstimatesModel(BaseModel): """The simulation parameter estimates data model. Args: BaseModel (BaseModel): The Pydantic Base model class. """ estimates: list[ParameterEstimateModel] | None = Field( description="The set of parameter estimates", default=None )